URB1 protein (Toxocara canis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

URB1

Nucleolar pre-ribosomal-associated protein 1. (487 aa)

Predicted Functional Partners:

PDCD11

0.976

UTP20

0.926

F55F8.3

0.923

POLR1A

0.916

ZK686.2

0.906

WDR36

0.901

Polr1b

0.900

DDX24

0.900

TBL3

0.899

nol6

0.883

Your Current Organism:

Toxocara canis

NCBI taxonomy Id: 6265
Other names: T. canis, dog roundworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX24	F55F8.3	A0A0B2VUL6	A0A0B2VTU3	ATP-dependent RNA helicase DDX24.	Periodic tryptophan protein 2-like protein.	0.937
DDX24	PDCD11	A0A0B2VUL6	A0A0B2VZ35	ATP-dependent RNA helicase DDX24.	Protein RRP5-like protein.	0.974
DDX24	POLR1A	A0A0B2VUL6	A0A0B2UXX9	ATP-dependent RNA helicase DDX24.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.676
DDX24	Polr1b	A0A0B2VUL6	A0A0B2V3K4	ATP-dependent RNA helicase DDX24.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.848
DDX24	TBL3	A0A0B2VUL6	A0A0B2UV33	ATP-dependent RNA helicase DDX24.	Transducin beta-like protein 3.	0.924
DDX24	URB1	A0A0B2VUL6	A0A0B2UWN7	ATP-dependent RNA helicase DDX24.	Nucleolar pre-ribosomal-associated protein 1.	0.900
DDX24	UTP20	A0A0B2VUL6	A0A0B2VUG9	ATP-dependent RNA helicase DDX24.	Small subunit processome component 20-like protein.	0.907
DDX24	WDR36	A0A0B2VUL6	A0A0B2VBN7	ATP-dependent RNA helicase DDX24.	WD repeat-containing protein 36.	0.833
DDX24	ZK686.2	A0A0B2VUL6	A0A0B2UYS9	ATP-dependent RNA helicase DDX24.	Putative ATP-dependent RNA helicase.	0.820
DDX24	nol6	A0A0B2VUL6	A0A0B2VWA9	ATP-dependent RNA helicase DDX24.	Nucleolar protein 6.	0.873
F55F8.3	DDX24	A0A0B2VTU3	A0A0B2VUL6	Periodic tryptophan protein 2-like protein.	ATP-dependent RNA helicase DDX24.	0.937
F55F8.3	PDCD11	A0A0B2VTU3	A0A0B2VZ35	Periodic tryptophan protein 2-like protein.	Protein RRP5-like protein.	0.999
F55F8.3	POLR1A	A0A0B2VTU3	A0A0B2UXX9	Periodic tryptophan protein 2-like protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.935
F55F8.3	Polr1b	A0A0B2VTU3	A0A0B2V3K4	Periodic tryptophan protein 2-like protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.948
F55F8.3	TBL3	A0A0B2VTU3	A0A0B2UV33	Periodic tryptophan protein 2-like protein.	Transducin beta-like protein 3.	0.999
F55F8.3	URB1	A0A0B2VTU3	A0A0B2UWN7	Periodic tryptophan protein 2-like protein.	Nucleolar pre-ribosomal-associated protein 1.	0.923
F55F8.3	UTP20	A0A0B2VTU3	A0A0B2VUG9	Periodic tryptophan protein 2-like protein.	Small subunit processome component 20-like protein.	0.999
F55F8.3	WDR36	A0A0B2VTU3	A0A0B2VBN7	Periodic tryptophan protein 2-like protein.	WD repeat-containing protein 36.	0.999
F55F8.3	ZK686.2	A0A0B2VTU3	A0A0B2UYS9	Periodic tryptophan protein 2-like protein.	Putative ATP-dependent RNA helicase.	0.848
F55F8.3	nol6	A0A0B2VTU3	A0A0B2VWA9	Periodic tryptophan protein 2-like protein.	Nucleolar protein 6.	0.999