STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ama-1DNA-directed RNA polymerase II subunit RPB1. (238 aa)    
Predicted Functional Partners:
rpb-2
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.983
POLR2C
DNA-directed RNA polymerase II subunit RPB3.
  
 
 0.981
POLR2F
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
    
 0.977
rpb-8
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
 0.977
POLR2K
DNA-directed RNA polymerases I, II, and III subunit RPABC4.
    
 0.977
Polr2g
DNA-directed RNA polymerase II subunit RPB7.
   
 0.977
Polr2d
DNA-directed RNA polymerase II subunit RPB4.
    
 0.977
RpII15
DNA-directed RNA polymerase II subunit RPB9; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.977
Polr2j
DNA-directed RNA polymerase II subunit RPB11.
    
 0.977
rpb-5
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
 0.977
Your Current Organism:
Toxocara canis
NCBI taxonomy Id: 6265
Other names: T. canis, dog roundworm
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