STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cyp-13A8-2Putative cytochrome P450 CYP13A8; Belongs to the cytochrome P450 family. (514 aa)    
Predicted Functional Partners:
eryA
Erythronolide synthase, modules 3 and 4; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.941
lgrB
Linear gramicidin synthase subunit B.
  
 0.941
Tcan_08751
Putative sulfite oxidase, mitochondrial.
    
 0.832
mdt-17
Mediator of RNA polymerase II transcription subunit 17.
    
 0.815
nft-1
Bis(5'-adenosyl)-triphosphatase.
    
 0.806
mdt-6
Mediator of RNA polymerase II transcription subunit 6.
    
 0.799
U26
Acyl-CoA synthetase family member 4-like protein.
  
 0.798
mdt-20
Mediator of RNA polymerase II transcription subunit 20; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 0.797
Fdxh
Adrenodoxin-like protein, mitochondrial.
  
 0.786
mtacp1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.782
Your Current Organism:
Toxocara canis
NCBI taxonomy Id: 6265
Other names: T. canis, dog roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.