STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp20Ubiquitin carboxyl-terminal hydrolase 20; Belongs to the peptidase C19 family. (809 aa)    
Predicted Functional Partners:
arr-1
Putative beta-arrestin.
    
 0.777
pcn-1
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
  0.749
RFC5
Replication factor C subunit 5.
    
 0.733
RpS27A
Ubiquitin-40S ribosomal protein S27a.
    
 0.711
ubq-1
Polyubiquitin-A.
    
 0.684
ubq-1-2
Polyubiquitin-A.
    
 0.684
ubq-1-3
Polyubiquitin-A.
    
 0.684
Traf1
TNF receptor-associated factor 1.
    
 0.676
ubq-2
Ubiquitin-60S ribosomal protein L40.
    
  0.672
RPL40
Ubiquitin-60S ribosomal protein L40.
    
  0.672
Your Current Organism:
Toxocara canis
NCBI taxonomy Id: 6265
Other names: T. canis, dog roundworm
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