STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tcan_10180Uncharacterized protein. (303 aa)    
Predicted Functional Partners:
PRPF4
U4/U6 small nuclear ribonucleoprotein Prp4.
   
 0.976
cyn-11
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.969
prpf31
U4/U6 small nuclear ribonucleoprotein Prp31.
   
 0.961
prp-8
Pre-mRNA-splicing factor 8-like protein.
   
 0.954
Prpf6
Pre-mRNA-processing factor 6.
   
 0.954
EFTUD2
U5 small nuclear ribonucleoprotein component.
   
 0.948
SART1
U4/U6.U5 tri-snRNP-associated protein 1.
    
 0.947
DDX23
Putative ATP-dependent RNA helicase DDX23; Belongs to the DEAD box helicase family.
   
 0.945
NAA38
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.936
snr-4
Small nuclear ribonucleoprotein Sm D2.
    
 0.934
Your Current Organism:
Toxocara canis
NCBI taxonomy Id: 6265
Other names: T. canis, dog roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.