STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atxn2lAtaxin-2-like protein. (1290 aa)    
Predicted Functional Partners:
lsm12a
Protein LSM12-like protein A.
    
 0.999
snr-2
Putative small nuclear ribonucleoprotein-associated protein B.
    
 
 0.975
TRNAU1AP
tRNA selenocysteine 1-associated protein 1.
    
 
 0.959
Pabpc1
Polyadenylate-binding protein 1.
   
 
 0.941
Pabpc1-2
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 
 0.941
lsmd1-a
LSM domain-containing protein 1-A.
    
 
 0.922
Tcan_18629
RRM domain-containing protein.
   
 
 0.909
ATXN3
Ataxin-3.
    
 0.895
cgh-1
ATP-dependent RNA helicase cgh-1.
    
 
 0.855
cgh-1-2
ATP-dependent RNA helicase cgh-1; Belongs to the DEAD box helicase family.
    
 
 0.855
Your Current Organism:
Toxocara canis
NCBI taxonomy Id: 6265
Other names: T. canis, dog roundworm
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