STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hrdl-1E3 ubiquitin-protein ligase hrd-like protein 1. (195 aa)    
Predicted Functional Partners:
RpS27A
Ubiquitin-40S ribosomal protein S27a.
    
 0.798
ubq-2
Ubiquitin-60S ribosomal protein L40.
    
 0.781
RPL40
Ubiquitin-60S ribosomal protein L40.
    
 0.781
TRIP12
E3 ubiquitin-protein ligase TRIP12.
   
 
 0.741
Ube2v2
Ubiquitin-conjugating enzyme E2 variant 2.
   
 0.715
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.696
ubq-1
Polyubiquitin-A.
    
 0.695
ubq-1-2
Polyubiquitin-A.
    
 0.695
ubq-1-3
Polyubiquitin-A.
    
 0.695
Retsat
All-trans-retinol 13,14-reductase.
     
 0.674
Your Current Organism:
Toxocara canis
NCBI taxonomy Id: 6265
Other names: T. canis, dog roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.