Tcan_18357 protein (Toxocara canis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Tcan_18357

GCP_C_terminal domain-containing protein. (866 aa)

Predicted Functional Partners:

Tubgcp2

0.994

tubgcp3

0.994

TUBG2

0.991

Tcan_16777

0.917

Tcan_04164

0.917

Lrpprc

0.917

ndc-80

0.712

mRpL10

0.658

nme6

0.612

Tcan_16840

0.612

Your Current Organism:

Toxocara canis

NCBI taxonomy Id: 6265
Other names: T. canis, dog roundworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lrpprc	TUBG2	A0A0B2VWE2	A0A0B2W7D5	Leucine-rich PPR motif-containing protein, mitochondrial.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.887
Lrpprc	Tcan_16840	A0A0B2VWE2	A0A0B2VEF7	Leucine-rich PPR motif-containing protein, mitochondrial.	Uncharacterized protein.	0.700
Lrpprc	Tcan_18357	A0A0B2VWE2	A0A0B2V8Q8	Leucine-rich PPR motif-containing protein, mitochondrial.	GCP_C_terminal domain-containing protein.	0.917
Lrpprc	Tubgcp2	A0A0B2VWE2	A0A0B2V6E3	Leucine-rich PPR motif-containing protein, mitochondrial.	Gamma-tubulin complex component.	0.867
Lrpprc	nme6	A0A0B2VWE2	A0A0B2UX90	Leucine-rich PPR motif-containing protein, mitochondrial.	Nucleoside diphosphate kinase 6.	0.700
Lrpprc	tubgcp3	A0A0B2VWE2	A0A0B2VL74	Leucine-rich PPR motif-containing protein, mitochondrial.	Gamma-tubulin complex component.	0.917
TUBG2	Lrpprc	A0A0B2W7D5	A0A0B2VWE2	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Leucine-rich PPR motif-containing protein, mitochondrial.	0.887
TUBG2	Tcan_04164	A0A0B2W7D5	A0A0B2VP21	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Uncharacterized protein.	0.887
TUBG2	Tcan_16777	A0A0B2W7D5	A0A0B2UXR7	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Uncharacterized protein.	0.887
TUBG2	Tcan_16840	A0A0B2W7D5	A0A0B2VEF7	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Uncharacterized protein.	0.714
TUBG2	Tcan_18357	A0A0B2W7D5	A0A0B2V8Q8	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	GCP_C_terminal domain-containing protein.	0.991
TUBG2	Tubgcp2	A0A0B2W7D5	A0A0B2V6E3	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Gamma-tubulin complex component.	0.999
TUBG2	nme6	A0A0B2W7D5	A0A0B2UX90	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Nucleoside diphosphate kinase 6.	0.714
TUBG2	tubgcp3	A0A0B2W7D5	A0A0B2VL74	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	Gamma-tubulin complex component.	0.999
Tcan_04164	TUBG2	A0A0B2VP21	A0A0B2W7D5	Uncharacterized protein.	Tubulin gamma chain; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome.	0.887
Tcan_04164	Tcan_16840	A0A0B2VP21	A0A0B2VEF7	Uncharacterized protein.	Uncharacterized protein.	0.700
Tcan_04164	Tcan_18357	A0A0B2VP21	A0A0B2V8Q8	Uncharacterized protein.	GCP_C_terminal domain-containing protein.	0.917
Tcan_04164	Tubgcp2	A0A0B2VP21	A0A0B2V6E3	Uncharacterized protein.	Gamma-tubulin complex component.	0.867
Tcan_04164	nme6	A0A0B2VP21	A0A0B2UX90	Uncharacterized protein.	Nucleoside diphosphate kinase 6.	0.700
Tcan_04164	tubgcp3	A0A0B2VP21	A0A0B2VL74	Uncharacterized protein.	Gamma-tubulin complex component.	0.917