glt-3 protein (Toxocara canis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

glt-3

Amino acid transporter. (518 aa)

Predicted Functional Partners:

nac-3

0.634

SLC13A5

0.634

nac-3-2

0.634

nac-3-3

0.634

Tcan_03541

0.634

Tcan_09627

0.634

Tcan_07680

0.634

alh-9

0.609

slc6a5

0.579

AGXT2

0.547

Your Current Organism:

Toxocara canis

NCBI taxonomy Id: 6265
Other names: T. canis, dog roundworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGXT2	alh-9	A0A0B2V8N1	A0A0B2VVY3	Alanine--glyoxylate aminotransferase 2, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Putative aldehyde dehydrogenase family 7 member A1-like protein; Belongs to the aldehyde dehydrogenase family.	0.896
AGXT2	glt-3	A0A0B2V8N1	A0A0B2VBY0	Alanine--glyoxylate aminotransferase 2, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Amino acid transporter.	0.547
SLC13A5	glt-3	A0A0B2USR7	A0A0B2VBY0	Solute carrier family 13 member 5.	Amino acid transporter.	0.634
Tcan_03541	glt-3	A0A0B2V0J7	A0A0B2VBY0	Putative transporter.	Amino acid transporter.	0.634
Tcan_07680	glt-3	A0A0B2VQW3	A0A0B2VBY0	Uncharacterized protein.	Amino acid transporter.	0.634
Tcan_09627	glt-3	A0A0B2V977	A0A0B2VBY0	Putative transporter.	Amino acid transporter.	0.634
alh-9	AGXT2	A0A0B2VVY3	A0A0B2V8N1	Putative aldehyde dehydrogenase family 7 member A1-like protein; Belongs to the aldehyde dehydrogenase family.	Alanine--glyoxylate aminotransferase 2, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.896
alh-9	glt-3	A0A0B2VVY3	A0A0B2VBY0	Putative aldehyde dehydrogenase family 7 member A1-like protein; Belongs to the aldehyde dehydrogenase family.	Amino acid transporter.	0.609
glt-3	AGXT2	A0A0B2VBY0	A0A0B2V8N1	Amino acid transporter.	Alanine--glyoxylate aminotransferase 2, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.547
glt-3	SLC13A5	A0A0B2VBY0	A0A0B2USR7	Amino acid transporter.	Solute carrier family 13 member 5.	0.634
glt-3	Tcan_03541	A0A0B2VBY0	A0A0B2V0J7	Amino acid transporter.	Putative transporter.	0.634
glt-3	Tcan_07680	A0A0B2VBY0	A0A0B2VQW3	Amino acid transporter.	Uncharacterized protein.	0.634
glt-3	Tcan_09627	A0A0B2VBY0	A0A0B2V977	Amino acid transporter.	Putative transporter.	0.634
glt-3	alh-9	A0A0B2VBY0	A0A0B2VVY3	Amino acid transporter.	Putative aldehyde dehydrogenase family 7 member A1-like protein; Belongs to the aldehyde dehydrogenase family.	0.609
glt-3	nac-3	A0A0B2VBY0	A0A0B2UQH9	Amino acid transporter.	Sodium-dependent high-affinity dicarboxylate transporter 3.	0.634
glt-3	nac-3-2	A0A0B2VBY0	A0A0B2UZ83	Amino acid transporter.	Sodium-dependent high-affinity dicarboxylate transporter 3.	0.634
glt-3	nac-3-3	A0A0B2VBY0	A0A0B2UZL1	Amino acid transporter.	Sodium-dependent high-affinity dicarboxylate transporter 3.	0.634
glt-3	slc6a5	A0A0B2VBY0	A0A0B2W459	Amino acid transporter.	Sodium-and chloride-dependent glycine transporter 2.	0.579
nac-3	glt-3	A0A0B2UQH9	A0A0B2VBY0	Sodium-dependent high-affinity dicarboxylate transporter 3.	Amino acid transporter.	0.634
nac-3	nac-3-2	A0A0B2UQH9	A0A0B2UZ83	Sodium-dependent high-affinity dicarboxylate transporter 3.	Sodium-dependent high-affinity dicarboxylate transporter 3.	0.550