STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtn1Reticulon-like protein. (88 aa)    
Predicted Functional Partners:
VTA1
Vacuolar protein sorting-associated protein VTA1-like protein.
    
   0.916
gch
GTP cyclohydrolase 1.
    
   0.837
gch-2
GTP cyclohydrolase 1.
    
   0.837
ATL1-2
Atlastin-1.
    
 
 0.737
LRRC24
Leucine-rich repeat-containing protein 24.
    
 0.707
Sec63
Translocation protein SEC63-like protein.
    
 
 0.686
rhi-1
Putative rho GDP-dissociation inhibitor.
     
 0.677
Wdr33
Pre-mRNA 3' end processing protein WDR33.
    
  0.648
LRCH3
Leucine-rich repeat and calponin homology domain-containing protein 3.
    
 0.643
RAB5B
Ras-related protein Rab-5B.
    
 
 0.641
Your Current Organism:
Toxocara canis
NCBI taxonomy Id: 6265
Other names: T. canis, dog roundworm
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.