STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdxB-2KEGG: bfr:BF2019 5.2e-103 D-3-phosphoglycerate dehydrogenase K00058; Psort location: Cytoplasmic, score: 9.97; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (306 aa)    
Predicted Functional Partners:
serC
Phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
 0.997
nifJ
KEGG: bth:BT1747 0. pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.858
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.857
EEX71126.1
Hypothetical protein.
 
    0.833
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
   0.607
pdxB-3
KEGG: bth:BT1207 1.4e-79 glycerate dehydrogenase (NADH-dependent) K00018; Psort location: Cytoplasmic, score: 9.26; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
  
 
0.593
rplQ
Ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
 
 
   0.583
pdxB
4-phosphoerythronate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate.
  
  
 
0.580
udk
Uridine kinase; KEGG: bfr:BF3195 2.5e-64 uridine kinase K00876; Psort location: Cytoplasmic, score: 8.96.
    
  0.559
EEX71423.1
Phosphoribulokinase/uridine kinase family protein; KEGG: bfs:BF4152 1.2e-169 putative phosphoribulose/uridine kinase K01868; Psort location: Cytoplasmic, score: 8.96.
    
  0.559
Your Current Organism:
Alloprevotella tannerae
NCBI taxonomy Id: 626522
Other names: A. tannerae ATCC 51259, Alloprevotella tannerae ATCC 51259, Prevotella tannerae ATCC 51259
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