Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEP28556.1 | EEP28557.1 | GCWU000342_01366 | GCWU000342_01367 | Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. | Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. | 0.773 |
EEP28556.1 | EEP28558.1 | GCWU000342_01366 | GCWU000342_01368 | Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. | Transcriptional regulator, AraC family; KEGG: reh:H16_B0473 7.3e-05 fmdR; formamidase fused to an AraC-type HTH DNA-binding domain K01455. | 0.566 |
EEP28557.1 | EEP28556.1 | GCWU000342_01367 | GCWU000342_01366 | Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. | Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. | 0.773 |
EEP28557.1 | EEP28558.1 | GCWU000342_01367 | GCWU000342_01368 | Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. | Transcriptional regulator, AraC family; KEGG: reh:H16_B0473 7.3e-05 fmdR; formamidase fused to an AraC-type HTH DNA-binding domain K01455. | 0.566 |
EEP28558.1 | EEP28556.1 | GCWU000342_01368 | GCWU000342_01366 | Transcriptional regulator, AraC family; KEGG: reh:H16_B0473 7.3e-05 fmdR; formamidase fused to an AraC-type HTH DNA-binding domain K01455. | Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. | 0.566 |
EEP28558.1 | EEP28557.1 | GCWU000342_01368 | GCWU000342_01367 | Transcriptional regulator, AraC family; KEGG: reh:H16_B0473 7.3e-05 fmdR; formamidase fused to an AraC-type HTH DNA-binding domain K01455. | Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. | 0.566 |
EEP28558.1 | nifJ | GCWU000342_01368 | GCWU000342_00973 | Transcriptional regulator, AraC family; KEGG: reh:H16_B0473 7.3e-05 fmdR; formamidase fused to an AraC-type HTH DNA-binding domain K01455. | KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737. | 0.891 |
EEP28558.1 | rpoA | GCWU000342_01368 | GCWU000342_01488 | Transcriptional regulator, AraC family; KEGG: reh:H16_B0473 7.3e-05 fmdR; formamidase fused to an AraC-type HTH DNA-binding domain K01455. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.579 |
nifJ | EEP28558.1 | GCWU000342_00973 | GCWU000342_01368 | KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737. | Transcriptional regulator, AraC family; KEGG: reh:H16_B0473 7.3e-05 fmdR; formamidase fused to an AraC-type HTH DNA-binding domain K01455. | 0.891 |
rpoA | EEP28558.1 | GCWU000342_01488 | GCWU000342_01368 | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Transcriptional regulator, AraC family; KEGG: reh:H16_B0473 7.3e-05 fmdR; formamidase fused to an AraC-type HTH DNA-binding domain K01455. | 0.579 |