STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEP27758.1DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 8.87. (391 aa)    
Predicted Functional Partners:
EEP28339.1
Cell shape determining protein, MreB/Mrl family; KEGG: hpa:HPAG1_1318 7.1e-51 rod shape-determining protein K01529; Psort location: Cytoplasmic, score: 9.98.
   
 
 0.893
EEP27734.1
Cell shape determining protein, MreB/Mrl family; KEGG: hpa:HPAG1_1318 6.0e-86 rod shape-determining protein K01529; Psort location: Cytoplasmic, score: 9.98.
   
 
 0.893
rpmC
Ribosomal protein L29; Psort location: Extracellular, score: 8.82; Belongs to the universal ribosomal protein uL29 family.
    
   0.837
rplV
Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
    
   0.837
rplW
Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
    
   0.837
EEP27759.1
Hypothetical protein.
       0.773
EEP28310.1
Hypothetical protein; KEGG: bca:BCE_1531 0.0034 hisI; phosphoribosyl-AMP cyclohydrolase K01496; Psort location: Cytoplasmic, score: 8.87.
  
   0.760
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
  
   0.760
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
  
 
   0.736
pgsA
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: tte:TTE1376 6.7e-39 pgsA2; Phosphatidylglycerophosphate synthase K00995; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
    0.713
Your Current Organism:
Shuttleworthia satelles
NCBI taxonomy Id: 626523
Other names: S. satelles DSM 14600, Shuttleworthia satelles DSM 14600, Shuttleworthia satelles VPI D143K-13, Shuttleworthia satelles str. DSM 14600, Shuttleworthia satelles strain DSM 14600
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