STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fumCFumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (454 aa)    
Predicted Functional Partners:
KXK65089.1
KEGG: ccl:Clocl_3326 2.5e-155 malic enzyme; K00027 malate dehydrogenase (oxaloacetate-decarboxylating); Psort location: Cytoplasmic, score: 9.97.
  
 
 0.948
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
   
 
 0.934
KXK65088.1
KEGG: awo:Awo_c19610 5.0e-182 (Si)-citrate-synthase K01647; Psort location: Cytoplasmic, score: 9.26.
  
 0.914
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
 
 0.905
KXK66166.1
FAD binding domain protein; KEGG: tbe:Trebr_2028 1.5e-219 L-aspartate oxidase K00239; Psort location: CytoplasmicMembrane, score: 7.88.
      0.864
argH
Argininosuccinate lyase; KEGG: pth:PTH_0517 2.8e-149 ArgH; argininosuccinate lyase; K01755 argininosuccinate lyase; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.835
KXK66384.1
Putative aspartate transaminase; KEGG: ccl:Clocl_1804 6.7e-123 aspartate/tyrosine/aromatic aminotransferase; K00812 aspartate aminotransferase; Psort location: Cytoplasmic, score: 9.97.
   
 0.830
KXK66510.1
Putative cyclase; KEGG: gth:Geoth_2298 1.3e-23 Arylformamidase; Psort location: Cytoplasmic, score: 8.96.
     
  0.800
KXK65881.1
Putative cyclase; KEGG: gsk:KN400_3294 7.6e-28 cyclase/hydrolase; K07130 arylformamidase; Psort location: Cytoplasmic, score: 8.96.
     
  0.800
KXK66155.1
Hypothetical protein.
       0.737
Your Current Organism:
Christensenella minuta
NCBI taxonomy Id: 626937
Other names: C. minuta, Catabacter sp. YIT 12065, Christensenella minuta Morotomi et al. 2012, DSM 22607, JCM 16072, YIT 12065
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