STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ScfBsix-Cys-in-45 modification radical SAM protein; KEGG: efu:HMPREF0351_12971 6.5e-14 arylsulfatase regulator, anaerobic sulfatase-maturating enzyme K06871; Psort location: Cytoplasmic, score: 8.96. (444 aa)    
Predicted Functional Partners:
ScfA
rSAM-modified six-cysteine peptide.
 
 
 
 0.989
KXK66217.1
Bacterial transferase hexapeptide repeat protein; KEGG: hse:Hsero_1727 1.9e-40 carbonic anhydrase/acetyltransferase; Psort location: Cytoplasmic, score: 9.26.
       0.812
KXK66380.1
Alpha-L-rhamnosidase protein; KEGG: mps:MPTP_1902 1.9e-173 alfa-L-rhamnosidase K05989; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.758
KXK64941.1
Hypothetical protein; KEGG: tmt:Tmath_1553 2.3e-28 hypothetical protein; K06967 tRNA (adenine22-N1)-methyltransferase; Psort location: Cytoplasmic, score: 8.96.
 
     0.653
KXK65319.1
Orn/Lys/Arg decarboxylase, major domain protein; KEGG: txy:Thexy_0073 7.6e-76 arginine decarboxylase K01582; Psort location: Cytoplasmic, score: 8.96.
 
     0.571
KXK65507.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.510
YajC
Preprotein translocase, YajC subunit; KEGG: apb:SAR116_0407 5.6e-09 YajC K03210.
       0.494
PutP
Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.492
KXK65144.1
Hypothetical protein; KEGG: tac:Ta0007a 0.0027 ntpF; V-type ATP synthase subunit H K02121; Psort location: Cytoplasmic, score: 8.96.
  
     0.445
KXK65062.1
Aluminum resistance protein; KEGG: bqy:MUS_1917 3.0e-104 ynbB; cystathionine gamma-lyase; Psort location: Cytoplasmic, score: 8.96.
 
     0.430
Your Current Organism:
Christensenella minuta
NCBI taxonomy Id: 626937
Other names: C. minuta, Catabacter sp. YIT 12065, Christensenella minuta Morotomi et al. 2012, DSM 22607, JCM 16072, YIT 12065
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