STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXK66231.1DNA polymerase LigD, polymerase domain protein; KEGG: eyy:EGYY_19050 5.2e-156 hypothetical protein; K01971 DNA ligase (ATP); Psort location: Cytoplasmic, score: 9.97. (491 aa)    
Predicted Functional Partners:
KXK66230.1
ATP-dependent DNA ligase domain protein; KEGG: csh:Closa_3638 1.4e-58 ATP dependent DNA ligase; K01971 DNA ligase (ATP); Psort location: Cytoplasmic, score: 9.97.
  
 0.999
ku
Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
  
 0.967
KXK66228.1
Putative HTH-type transcriptional activator HxlR; Psort location: Cytoplasmic, score: 9.26.
       0.505
KXK65223.1
AlkA protein; KEGG: aoe:Clos_0146 4.7e-202 AraC family transcriptional regulator; K13529 AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II; Psort location: Cytoplasmic, score: 9.97.
  
   
 0.426
Your Current Organism:
Christensenella minuta
NCBI taxonomy Id: 626937
Other names: C. minuta, Catabacter sp. YIT 12065, Christensenella minuta Morotomi et al. 2012, DSM 22607, JCM 16072, YIT 12065
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.