STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXK65839.1G5 domain protein. (469 aa)    
Predicted Functional Partners:
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.829
KXK66848.1
Hypothetical protein.
  
  
0.750
ispE
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
     
 0.567
KXK65838.1
Penicillin-binding protein, transpeptidase domain protein; KEGG: csh:Closa_3345 1.2e-63 peptidoglycan glycosyltransferase.
 
  
 0.540
KXK64259.1
KEGG: bce:BC2464 9.4e-15 S-layer protein / peptidoglycan endo-beta-N-acetylglucosaminidase K01238.
   
  
 0.527
KXK66682.1
NlpC/P60 family protein; KEGG: bcx:BCA_5324 5.9e-23 putative cell wall endopeptidase, NlpC/P60 family.
 
  
 0.500
KXK65328.1
KEGG: toc:Toce_0029 1.2e-68 TatD family hydrolase; K03424 TatD DNase family protein; Psort location: Cytoplasmic, score: 9.97.
     
 0.486
KXK66854.1
VanW-like protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.482
KXK66429.1
NlpC/P60 family protein; KEGG: nmw:NMAA_0152 5.6e-08 D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase cwlS Cell wall lytic enzyme associated with cell separation; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.477
KXK65874.1
KEGG: drm:Dred_0198 1.8e-67 RNA polymerase factor sigma-70 K03091; Psort location: Cytoplasmic, score: 8.96.
  
   
 0.472
Your Current Organism:
Christensenella minuta
NCBI taxonomy Id: 626937
Other names: C. minuta, Catabacter sp. YIT 12065, Christensenella minuta Morotomi et al. 2012, DSM 22607, JCM 16072, YIT 12065
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.