STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXK65745.1AMP-binding enzyme; KEGG: ccl:Clocl_3969 1.8e-115 AMP-forming long-chain acyl-CoA synthetase; K01897 long-chain acyl-CoA synthetase; Psort location: Cytoplasmic, score: 9.97. (553 aa)    
Predicted Functional Partners:
KXK66705.1
AMP-binding enzyme; KEGG: ctx:Clo1313_1024 1.4e-115 AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase; Psort location: CytoplasmicMembrane, score: 7.88.
  
  
 
0.907
KXK66737.1
AMP-binding enzyme; KEGG: ccl:Clocl_3969 3.8e-104 AMP-forming long-chain acyl-CoA synthetase; K01897 long-chain acyl-CoA synthetase; Psort location: CytoplasmicMembrane, score: 7.88.
  
  
 
0.902
acpP-2
Putative acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
     
 0.490
KXK65747.1
Hypothetical protein; KEGG: ctu:CTU_13460 2.3e-13 tolA; cell envelope integrity inner membrane protein TolA K03646.
       0.480
KXK65743.1
KEGG: elm:ELI_1420 2.8e-124 hypothetical protein; K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+); Psort location: Cytoplasmic, score: 9.97.
  
  
 0.472
rplE
Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
 
 0.470
rplR
Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
    
 
 0.420
Your Current Organism:
Christensenella minuta
NCBI taxonomy Id: 626937
Other names: C. minuta, Catabacter sp. YIT 12065, Christensenella minuta Morotomi et al. 2012, DSM 22607, JCM 16072, YIT 12065
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.