STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXK65627.1Transcriptional regulator, PadR family; KEGG: ase:ACPL_2208 1.2e-06 Coproporphyrinogen 3 oxidase, aerobic. (114 aa)    
Predicted Functional Partners:
KXK65628.1
Hypothetical protein.
       0.572
KXK66640.1
Sigma-70 region 2; KEGG: bpu:BPUM_0902 3.3e-11 sigM; RNA polymerase sigma factor SigM K03088; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.488
KXK66436.1
Sigma-70, region 4; KEGG: bya:BANAU_0881 0.0023 sigM; RNA polymerase sigma factor SigM K03088.
  
    0.419
KXK64205.1
Sigma-70 region 2; KEGG: acl:ACL_0425 2.9e-12 ECF subfamily RNA polymerase sigma-70 factor K03088; Psort location: CytoplasmicMembrane, score: 9.82.
  
    0.419
Your Current Organism:
Christensenella minuta
NCBI taxonomy Id: 626937
Other names: C. minuta, Catabacter sp. YIT 12065, Christensenella minuta Morotomi et al. 2012, DSM 22607, JCM 16072, YIT 12065
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.