STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXK65231.1PP-loop family protein; KEGG: hip:CGSHiEE_04405 3.7e-28 threonyl-tRNA synthetase K14058; Psort location: Cytoplasmic, score: 9.26; Belongs to the TtcA family. (241 aa)    
Predicted Functional Partners:
KXK65230.1
Putative small multi-drug export protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.587
pth
aminoacyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
  
 0.548
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
  
  
 0.522
LysS
lysine--tRNA ligase; KEGG: ccl:Clocl_3911 8.9e-176 lysyl-tRNA synthetase (class II); K04567 lysyl-tRNA synthetase, class II; Psort location: Cytoplasmic, score: 10.00.
   
 
 0.440
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
  
  
 0.422
KXK64384.1
KEGG: tpt:Tpet_1716 3.6e-124 UDP-N-acetylglucosamine 2-epimerase K01791; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.404
Your Current Organism:
Christensenella minuta
NCBI taxonomy Id: 626937
Other names: C. minuta, Catabacter sp. YIT 12065, Christensenella minuta Morotomi et al. 2012, DSM 22607, JCM 16072, YIT 12065
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.