STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXK64734.1Putative pleiotropic regulatory protein DegT; KEGG: bpb:bpr_I2550 1.8e-131 TDP-4-keto-6-deoxy-D-glucose transaminase K02805; Psort location: Cytoplasmic, score: 9.97; Belongs to the DegT/DnrJ/EryC1 family. (381 aa)    
Predicted Functional Partners:
RfbB
KEGG: ral:Rumal_3856 7.6e-147 dTDP-glucose 4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase; Psort location: Cytoplasmic, score: 9.97; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 0.966
KXK64735.1
ATP-grasp domain protein; KEGG: ctc:CTC01706 3.5e-55 carbamoyl-phosphate synthase large chain K01955; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.946
RfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
 
 0.932
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
 
    0.873
KXK64732.1
Glycosyltransferase, group 2 family protein; KEGG: csh:Closa_0551 5.1e-86 family 2 glycosyl transferase; K00721 dolichol-phosphate mannosyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.849
KXK66533.1
Putative epimerase/dehydratase WbiI; KEGG: lsi:HN6_00820 1.6e-114 UDP-N-acetylglucosamine 4,6-dehydratase / UDP-D-quinovosamine 4-dehydrogenase; Psort location: CytoplasmicMembrane, score: 9.16.
  
 0.795
KXK64733.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.783
KXK64736.1
Hypothetical protein; KEGG: bmj:BMULJ_02120 7.2e-05 pdhC; dihydrolipoamide acetyltransferase K00627; Psort location: Periplasmic, score: 9.76.
       0.773
RfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
 
  
 0.618
KXK64384.1
KEGG: tpt:Tpet_1716 3.6e-124 UDP-N-acetylglucosamine 2-epimerase K01791; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.604
Your Current Organism:
Christensenella minuta
NCBI taxonomy Id: 626937
Other names: C. minuta, Catabacter sp. YIT 12065, Christensenella minuta Morotomi et al. 2012, DSM 22607, JCM 16072, YIT 12065
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.