STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXK64942.1Dinuclear metal center protein, YbgI family; KEGG: hip:CGSHiEE_02770 2.1e-07 seryl-tRNA synthetase; Psort location: Cytoplasmic, score: 8.96; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. (370 aa)    
Predicted Functional Partners:
KXK64941.1
Hypothetical protein; KEGG: tmt:Tmath_1553 2.3e-28 hypothetical protein; K06967 tRNA (adenine22-N1)-methyltransferase; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.951
KXK64943.1
Zinc ribbon domain protein; KEGG: nce:NCER_100357 3.9e-06 hypothetical protein; K10866 DNA repair protein RAD50; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.942
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
     
 0.757
hisC
KEGG: eha:Ethha_2692 3.0e-81 histidinol-phosphate aminotransferase; K00817 histidinol-phosphate aminotransferase; Psort location: Cytoplasmic, score: 9.26; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
  
 0.749
rnhA
Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
  
 0.727
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
     
 0.709
KXK65421.1
Peptidase T-like protein; KEGG: bya:BANAU_2374 3.2e-84 yqjE; M20B subfamily peptidase; Psort location: Cytoplasmic, score: 9.97.
 
    0.632
TsaB
Universal bacterial protein YeaZ; KEGG: cce:Ccel_0800 7.0e-34 peptidase M22 glycoprotease; K14742 hypothetical protease.
 
   
 0.553
era
Ribosome biogenesis GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
 
    0.527
KXK65153.1
Phosphoglycerate mutase family protein; KEGG: cbi:CLJ_B0861 7.3e-23 cobC; alpha-ribazole phosphatase K02226; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.520
Your Current Organism:
Christensenella minuta
NCBI taxonomy Id: 626937
Other names: C. minuta, Catabacter sp. YIT 12065, Christensenella minuta Morotomi et al. 2012, DSM 22607, JCM 16072, YIT 12065
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