STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DprADNA protecting protein DprA; KEGG: pfe:PSF113_0071 2.6e-34 smf; protein Smf K04096; Psort location: Cytoplasmic, score: 8.96. (368 aa)    
Predicted Functional Partners:
KXK65027.1
Mg chelatase-like protein; KEGG: chu:CHU_0354 2.2e-131 ch1I; magnesium chelatase subunit ChlI K07391; Psort location: Cytoplasmic, score: 9.97.
 
 0.976
KXK65174.1
Putative DNA internalization competence protein ComEC/Rec2-like protein; KEGG: apb:SAR116_0501 1.7e-10 DNA uptake protein ComEC K02238; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.934
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
   
 0.917
KXK65227.1
comF family protein; KEGG: nde:NIDE1089 1.4e-17 putative phosphoribosyltransferase; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.911
KXK65025.1
TIGR00252 family protein; KEGG: sat:SYN_00772 5.5e-18 endonuclease K07460; Belongs to the UPF0102 family.
 
    0.896
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
    0.757
YlqF
Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
  
    0.754
KXK65026.1
Dolichyl-phosphate-mannose-protein mannosyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.736
KXK64494.1
Bacterial peptidase A24 protein; KEGG: awo:Awo_c02020 6.3e-56 pilD; type IV prepilin-like leader peptidase PilD K02654; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.706
hslV
ATP-dependent protease HslVU, peptidase subunit; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
   
   0.681
Your Current Organism:
Christensenella minuta
NCBI taxonomy Id: 626937
Other names: C. minuta, Catabacter sp. YIT 12065, Christensenella minuta Morotomi et al. 2012, DSM 22607, JCM 16072, YIT 12065
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.