STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXK65056.1Peptidoglycan binding domain protein; KEGG: bmq:BMQ_1654 6.1e-35 lytF; endopeptidase LytF. (400 aa)    
Predicted Functional Partners:
KXK66429.1
NlpC/P60 family protein; KEGG: nmw:NMAA_0152 5.6e-08 D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase cwlS Cell wall lytic enzyme associated with cell separation; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.776
KXK65055.1
Putative transcriptional regulatory protein ResD; KEGG: fal:FRAAL1628 6.7e-36 response regulator in two-component regulatory system K05971; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.557
mutL
DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
  
    0.547
miaA
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
       0.540
miaB
tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
  
    0.538
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
       0.530
KXK65062.1
Aluminum resistance protein; KEGG: bqy:MUS_1917 3.0e-104 ynbB; cystathionine gamma-lyase; Psort location: Cytoplasmic, score: 8.96.
       0.515
KXK66132.1
Transglycosylase; KEGG: mas:Mahau_1174 6.0e-131 penicillin-binding protein K05366; Psort location: CytoplasmicMembrane, score: 9.82.
 
   
 0.459
KXK64169.1
Penicillin-binding protein dimerization domain protein; KEGG: mas:Mahau_1596 6.7e-100 stage V sporulation protein D K08384; Psort location: CytoplasmicMembrane, score: 9.82.
 
  
 0.454
KXK66682.1
NlpC/P60 family protein; KEGG: bcx:BCA_5324 5.9e-23 putative cell wall endopeptidase, NlpC/P60 family.
 
   
0.434
Your Current Organism:
Christensenella minuta
NCBI taxonomy Id: 626937
Other names: C. minuta, Catabacter sp. YIT 12065, Christensenella minuta Morotomi et al. 2012, DSM 22607, JCM 16072, YIT 12065
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