STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AlrAlanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (380 aa)    
Predicted Functional Partners:
ddl
D-ala D-ala ligase protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
 
 0.954
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
   
 0.949
KXK66527.1
Hypothetical protein; KEGG: lln:LLNZ_06290 0.0011 D-alanine--poly(phosphoribitol) ligase subunit 2 K14188.
    
 0.906
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
 
   
 0.850
KXK65149.1
ACT domain protein; KEGG: sat:SYN_01196 4.3e-25 acetolactate synthase small subunit; Psort location: Cytoplasmic, score: 8.96.
       0.773
KXK65147.1
KEGG: toc:Toce_0352 5.0e-31 5-formyltetrahydrofolate cyclo-ligase; K01934 5-formyltetrahydrofolate cyclo-ligase; Psort location: Cytoplasmic, score: 8.96.
       0.766
KXK65150.1
KEGG: ccl:Clocl_1734 2.4e-56 indolepyruvate ferredoxin oxidoreductase subunit beta; K00180 indolepyruvate ferredoxin oxidoreductase, beta subunit; Psort location: Cytoplasmic, score: 8.96.
       0.762
IorA
Indolepyruvate ferredoxin oxidoreductase, alpha subunit; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
       0.762
RsmD
RNA methyltransferase, RsmD family; KEGG: dat:HRM2_11150 1.5e-29 putative small methyltransferase; K08316 16S rRNA (guanine966-N2)-methyltransferase; Psort location: Cytoplasmic, score: 8.96.
       0.760
KXK65144.1
Hypothetical protein; KEGG: tac:Ta0007a 0.0027 ntpF; V-type ATP synthase subunit H K02121; Psort location: Cytoplasmic, score: 8.96.
       0.757
Your Current Organism:
Christensenella minuta
NCBI taxonomy Id: 626937
Other names: C. minuta, Catabacter sp. YIT 12065, Christensenella minuta Morotomi et al. 2012, DSM 22607, JCM 16072, YIT 12065
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