KXK64201.1 protein (Christensenella minuta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KXK64201.1

Hypothetical protein. (386 aa)

Predicted Functional Partners:

KXK66288.1

0.758

KXK65853.1

0.758

KXK64202.1

0.746

KXK64203.1

0.686

KXK64204.1

0.676

KXK66476.1

0.520

KXK64205.1

0.516

KXK66280.1

0.431

Your Current Organism:

Christensenella minuta

NCBI taxonomy Id: 626937
Other names: C. minuta, Catabacter sp. YIT 12065, Christensenella minuta Morotomi et al. 2012, DSM 22607, JCM 16072, YIT 12065

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KXK64201.1	KXK64202.1	HMPREF3293_02845	HMPREF3293_02846	Hypothetical protein.	NHLP bacteriocin system ABC transporter, ATP-binding protein; KEGG: npu:Npun_R1802 6.7e-116 ABC transporter; Psort location: CytoplasmicMembrane, score: 10.00.	0.746
KXK64201.1	KXK64203.1	HMPREF3293_02845	HMPREF3293_02847	Hypothetical protein.	NHLP bacteriocin system ABC transporter, peptidase/ATP-binding protein; KEGG: ava:Ava_1129 4.1e-164 ABC transporter; Psort location: CytoplasmicMembrane, score: 10.00.	0.686
KXK64201.1	KXK64204.1	HMPREF3293_02845	HMPREF3293_02848	Hypothetical protein.	Putative NHLP bacteriocin system secretion protein; Psort location: Cytoplasmic, score: 8.96.	0.676
KXK64201.1	KXK64205.1	HMPREF3293_02845	HMPREF3293_02849	Hypothetical protein.	Sigma-70 region 2; KEGG: acl:ACL_0425 2.9e-12 ECF subfamily RNA polymerase sigma-70 factor K03088; Psort location: CytoplasmicMembrane, score: 9.82.	0.516
KXK64201.1	KXK65853.1	HMPREF3293_02845	HMPREF3293_01346	Hypothetical protein.	Response regulator receiver domain protein; KEGG: bbp:BBPR_0749 8.1e-24 transcriptional regulator K07183; Psort location: Cytoplasmic, score: 9.97.	0.758
KXK64201.1	KXK66280.1	HMPREF3293_02845	HMPREF3293_01017	Hypothetical protein.	Nitrogen regulatory protein P-II; KEGG: psl:Psta_0819 2.7e-89 multi-sensor hybrid histidine kinase K03320; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the P(II) protein family.	0.431
KXK64201.1	KXK66288.1	HMPREF3293_02845	HMPREF3293_01025	Hypothetical protein.	ANTAR domain protein; KEGG: bpt:Bpet3642 2.8e-05 response regulator NasT K07183; Psort location: Cytoplasmic, score: 8.96.	0.758
KXK64201.1	KXK66476.1	HMPREF3293_02845	HMPREF3293_00661	Hypothetical protein.	Ribosomal protein L31; KEGG: apb:SAR116_2278 0.00086 50S ribosomal protein L31 K02909; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bL31 family.	0.520
KXK64202.1	KXK64201.1	HMPREF3293_02846	HMPREF3293_02845	NHLP bacteriocin system ABC transporter, ATP-binding protein; KEGG: npu:Npun_R1802 6.7e-116 ABC transporter; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein.	0.746
KXK64202.1	KXK64203.1	HMPREF3293_02846	HMPREF3293_02847	NHLP bacteriocin system ABC transporter, ATP-binding protein; KEGG: npu:Npun_R1802 6.7e-116 ABC transporter; Psort location: CytoplasmicMembrane, score: 10.00.	NHLP bacteriocin system ABC transporter, peptidase/ATP-binding protein; KEGG: ava:Ava_1129 4.1e-164 ABC transporter; Psort location: CytoplasmicMembrane, score: 10.00.	0.787
KXK64202.1	KXK64204.1	HMPREF3293_02846	HMPREF3293_02848	NHLP bacteriocin system ABC transporter, ATP-binding protein; KEGG: npu:Npun_R1802 6.7e-116 ABC transporter; Psort location: CytoplasmicMembrane, score: 10.00.	Putative NHLP bacteriocin system secretion protein; Psort location: Cytoplasmic, score: 8.96.	0.941
KXK64202.1	KXK64205.1	HMPREF3293_02846	HMPREF3293_02849	NHLP bacteriocin system ABC transporter, ATP-binding protein; KEGG: npu:Npun_R1802 6.7e-116 ABC transporter; Psort location: CytoplasmicMembrane, score: 10.00.	Sigma-70 region 2; KEGG: acl:ACL_0425 2.9e-12 ECF subfamily RNA polymerase sigma-70 factor K03088; Psort location: CytoplasmicMembrane, score: 9.82.	0.638
KXK64203.1	KXK64201.1	HMPREF3293_02847	HMPREF3293_02845	NHLP bacteriocin system ABC transporter, peptidase/ATP-binding protein; KEGG: ava:Ava_1129 4.1e-164 ABC transporter; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein.	0.686
KXK64203.1	KXK64202.1	HMPREF3293_02847	HMPREF3293_02846	NHLP bacteriocin system ABC transporter, peptidase/ATP-binding protein; KEGG: ava:Ava_1129 4.1e-164 ABC transporter; Psort location: CytoplasmicMembrane, score: 10.00.	NHLP bacteriocin system ABC transporter, ATP-binding protein; KEGG: npu:Npun_R1802 6.7e-116 ABC transporter; Psort location: CytoplasmicMembrane, score: 10.00.	0.787
KXK64203.1	KXK64204.1	HMPREF3293_02847	HMPREF3293_02848	NHLP bacteriocin system ABC transporter, peptidase/ATP-binding protein; KEGG: ava:Ava_1129 4.1e-164 ABC transporter; Psort location: CytoplasmicMembrane, score: 10.00.	Putative NHLP bacteriocin system secretion protein; Psort location: Cytoplasmic, score: 8.96.	0.954
KXK64203.1	KXK64205.1	HMPREF3293_02847	HMPREF3293_02849	NHLP bacteriocin system ABC transporter, peptidase/ATP-binding protein; KEGG: ava:Ava_1129 4.1e-164 ABC transporter; Psort location: CytoplasmicMembrane, score: 10.00.	Sigma-70 region 2; KEGG: acl:ACL_0425 2.9e-12 ECF subfamily RNA polymerase sigma-70 factor K03088; Psort location: CytoplasmicMembrane, score: 9.82.	0.669
KXK64204.1	KXK64201.1	HMPREF3293_02848	HMPREF3293_02845	Putative NHLP bacteriocin system secretion protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein.	0.676
KXK64204.1	KXK64202.1	HMPREF3293_02848	HMPREF3293_02846	Putative NHLP bacteriocin system secretion protein; Psort location: Cytoplasmic, score: 8.96.	NHLP bacteriocin system ABC transporter, ATP-binding protein; KEGG: npu:Npun_R1802 6.7e-116 ABC transporter; Psort location: CytoplasmicMembrane, score: 10.00.	0.941
KXK64204.1	KXK64203.1	HMPREF3293_02848	HMPREF3293_02847	Putative NHLP bacteriocin system secretion protein; Psort location: Cytoplasmic, score: 8.96.	NHLP bacteriocin system ABC transporter, peptidase/ATP-binding protein; KEGG: ava:Ava_1129 4.1e-164 ABC transporter; Psort location: CytoplasmicMembrane, score: 10.00.	0.954
KXK64204.1	KXK64205.1	HMPREF3293_02848	HMPREF3293_02849	Putative NHLP bacteriocin system secretion protein; Psort location: Cytoplasmic, score: 8.96.	Sigma-70 region 2; KEGG: acl:ACL_0425 2.9e-12 ECF subfamily RNA polymerase sigma-70 factor K03088; Psort location: CytoplasmicMembrane, score: 9.82.	0.654