STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsK-4Putative ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (317 aa)    
Predicted Functional Partners:
KXK65240.1
KEGG: rrs:RoseRS_0965 2.6e-91 ribose-phosphate pyrophosphokinase K00948; Psort location: Cytoplasmic, score: 9.97.
  
 0.927
RpiB
Ribose-5-phosphate isomerase B; KEGG: cbt:CLH_0478 8.0e-49 rpiB; ribose 5-phosphate isomerase B; K01808 ribose 5-phosphate isomerase B; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.914
KXK64199.1
Putative phosphoglucomutase; KEGG: ccl:Clocl_2234 7.8e-145 phosphomannomutase K01835; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.910
rbsA-5
Putative sugar ABC transporter, ATP binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
  
 0.826
KXK64112.1
Putative L-arabinose ABC transporter, permease protein AraH; KEGG: bac:BamMC406_4659 2.1e-55 monosaccharide-transporting ATPase K10440; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.824
pdxS
Pyridoxal 5'-phosphate synthase, synthase subunit Pdx1; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family.
     
 0.816
pdxT
Pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.
     
 0.813
KXK64109.1
KEGG: tte:TTE1023 1.7e-55 nagB; glucosamine-6-phosphate deaminase K02564; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.792
KXK64110.1
KEGG: acl:ACL_0286 1.7e-62 pigL; N-acetylglucosaminylphosphatidylinositol deacetylase; Psort location: Cytoplasmic, score: 8.96.
     
 0.781
KXK66220.1
Putative cytidine/uridine-specific hydrolase; KEGG: pde:Pden_4001 6.0e-51 purine nucleosidase K01239.
 
  
 0.757
Your Current Organism:
Christensenella minuta
NCBI taxonomy Id: 626937
Other names: C. minuta, Catabacter sp. YIT 12065, Christensenella minuta Morotomi et al. 2012, DSM 22607, JCM 16072, YIT 12065
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