STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aguAAgmatine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)    
Predicted Functional Partners:
OLA39455.1
N-carbamoylputrescine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.996
OLA39613.1
Carboxynorspermidine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.866
OLA37196.1
Carbon-nitrogen hydrolase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.843
OLA37804.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.722
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
    
 0.709
OLA39458.1
Arginine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.669
OLA39456.1
Saccharopine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.558
OLA37748.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.510
OLA37755.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.447
OLA39576.1
Decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.440
Your Current Organism:
Phascolarctobacterium succinatutens
NCBI taxonomy Id: 626940
Other names: DSM 22533, JCM 16074, P. succinatutens, Phascolarctobacterium sp. YIT 12068, Phascolarctobacterium succinatutens Watanabe et al. 2012, YIT 12067
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