STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GcM3_2010275'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1331 aa)    
Predicted Functional Partners:
GcM3_222010
Putative dcp1 superfamily decapping enzyme.
    
 0.999
GcM3_009030
Putative mrna decapping complex subunit 2.
   
 0.998
GcM3_072008
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.
  
 
0.979
LSM1
U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.
    
 0.967
LSM3
U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.955
GcM3_036013
DNA topoisomerase 2-associated protein pat1.
    
 0.954
GcM3_086016
Putative ATP-dependent RNA helicase.
   
 
 0.940
GcM3_043033
Enhancer of mRNA-decapping protein 3.
   
 
 0.938
GcM3_081009
Uncharacterized protein.
    
 0.936
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.924
Your Current Organism:
Golovinomyces cichoracearum
NCBI taxonomy Id: 62708
Other names: Erysiphe cichoracearum, G. cichoracearum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.