STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GcM3_198010Chromatin remodeling factor mit1. (1619 aa)    
Predicted Functional Partners:
GcM3_212001
Histone acetyltransferase type B subunit 2.
   
 0.981
GcM3_215008
ENDO3c domain-containing protein.
    
 0.968
GcM3_199016
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.967
GcM3_177007
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.967
GcM3_032006
Lysine-specific histone demethylase 1A.
   
 0.942
GcM3_108001
Putative heterochromatin protein one protein.
    
 0.912
GcM3_025003
Chromo domain-containing protein.
    
 0.909
GcM3_171007
Actin-like protein arp5; Belongs to the actin family.
    
 0.882
GcM3_019024
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 0.881
GcM3_185031
DNA-directed RNA polymerases I, II, and III.
    
 0.877
Your Current Organism:
Golovinomyces cichoracearum
NCBI taxonomy Id: 62708
Other names: Erysiphe cichoracearum, G. cichoracearum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.