GcM3_195005 protein (Golovinomyces cichoracearum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GcM3_195005

Elongator complex protein 2. (808 aa)

Predicted Functional Partners:

GcM3_065013

0.995

GcM3_017001

0.978

GcM3_031018

0.968

GcM3_127010

0.967

GcM3_127002

0.934

GcM3_045005

0.902

GcM3_206009

0.813

GcM3_203027

0.782

GcM3_206015

0.766

GcM3_030008

0.766

Your Current Organism:

Golovinomyces cichoracearum

NCBI taxonomy Id: 62708
Other names: Erysiphe cichoracearum, G. cichoracearum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GcM3_017001	GcM3_030008	A0A420J8E4	A0A420J558	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Uncharacterized protein.	0.796
GcM3_017001	GcM3_031018	A0A420J8E4	A0A420J4W7	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Killer toxin sensitivity protein.	0.955
GcM3_017001	GcM3_045005	A0A420J8E4	A0A420J0Y0	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Protein kti12.	0.947
GcM3_017001	GcM3_065013	A0A420J8E4	A0A420IUX1	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.997
GcM3_017001	GcM3_127002	A0A420J8E4	A0A420I5P6	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Putative rare lipoprotein a-like double-psi beta-barrel domain-containing.	0.940
GcM3_017001	GcM3_127010	A0A420J8E4	A0A420I5V0	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator complex protein 4.	0.988
GcM3_017001	GcM3_195005	A0A420J8E4	A0A420HG58	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator complex protein 2.	0.978
GcM3_017001	GcM3_203027	A0A420J8E4	A0A420HCV8	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Prion formation protein 1.	0.554
GcM3_017001	GcM3_206009	A0A420J8E4	A0A420HBS0	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	U3 small nucleolar RNA-associated protein 21-like protein.	0.731
GcM3_017001	GcM3_206015	A0A420J8E4	A0A420HBS2	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Myosin-1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.796
GcM3_030008	GcM3_017001	A0A420J558	A0A420J8E4	Uncharacterized protein.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.796
GcM3_030008	GcM3_065013	A0A420J558	A0A420IUX1	Uncharacterized protein.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.799
GcM3_030008	GcM3_127010	A0A420J558	A0A420I5V0	Uncharacterized protein.	Elongator complex protein 4.	0.806
GcM3_030008	GcM3_195005	A0A420J558	A0A420HG58	Uncharacterized protein.	Elongator complex protein 2.	0.766
GcM3_030008	GcM3_203027	A0A420J558	A0A420HCV8	Uncharacterized protein.	Prion formation protein 1.	0.569
GcM3_031018	GcM3_017001	A0A420J4W7	A0A420J8E4	Killer toxin sensitivity protein.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.955
GcM3_031018	GcM3_045005	A0A420J4W7	A0A420J0Y0	Killer toxin sensitivity protein.	Protein kti12.	0.855
GcM3_031018	GcM3_065013	A0A420J4W7	A0A420IUX1	Killer toxin sensitivity protein.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.969
GcM3_031018	GcM3_127010	A0A420J4W7	A0A420I5V0	Killer toxin sensitivity protein.	Elongator complex protein 4.	0.997
GcM3_031018	GcM3_195005	A0A420J4W7	A0A420HG58	Killer toxin sensitivity protein.	Elongator complex protein 2.	0.968