STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GcM3_183041Pre-rRNA-processing protein esf1. (693 aa)    
Predicted Functional Partners:
GcM3_105017
Uncharacterized protein C3B8.09.
   
 
 0.994
GcM3_024037
RNA helicase.
   
 
 0.994
GcM3_223005
U3 small nucleolar RNA-associated protein 6.
   
 
 0.989
GcM3_183004
U3 small nucleolar RNA-associated protein 22.
   
 
 0.987
GcM3_175014
Putative U3 small nucleolar RNA-associated protein 18.
   
 
 0.984
GcM3_018026
ATP-dependent rRNA helicase rrp3; Belongs to the DEAD box helicase family.
   
 
 0.984
NAT10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.980
GcM3_073028
Protein bfr2.
  
 
 0.975
GcM3_056009
Putative ATP-dependent RNA helicase prh1.
   
 
 0.969
GcM3_087006
Pre-rRNA-processing protein ESF2.
   
 
 0.967
Your Current Organism:
Golovinomyces cichoracearum
NCBI taxonomy Id: 62708
Other names: Erysiphe cichoracearum, G. cichoracearum
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