STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GcM3_125021Putative hmg box protein. (399 aa)    
Predicted Functional Partners:
GcM3_178012
Histone H2A; Belongs to the histone H2A family.
   
 0.903
GcM3_032028
Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family.
    
 0.897
GcM3_038009
General transcription and DNA repair factor IIH subunit tcf-29.
    
 0.875
GcM3_137003
General transcription and DNA repair factor IIH subunit tfb4.
    
 0.870
GcM3_019024
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
    
 0.863
GcM3_222022
Actin-related protein 4.
   
 0.859
GcM3_082010
General transcription and DNA repair factor IIH helicase subunit XPB.
   
 0.859
GcM3_171007
Actin-like protein arp5; Belongs to the actin family.
    
 0.857
GcM3_138002
Putative DNA helicase INO80.
    
 0.855
GcM3_128010
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.854
Your Current Organism:
Golovinomyces cichoracearum
NCBI taxonomy Id: 62708
Other names: Erysiphe cichoracearum, G. cichoracearum
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