STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GcM3_074004Putative activating signal cointegrator 1 complex subunit 3. (245 aa)    
Predicted Functional Partners:
GcM3_185009
Pre-mRNA-processing-splicing factor 8.
   
 0.980
GcM3_029010
Pre-mRNA-splicing factor prp1.
   
 0.968
GcC1_037020
Small nuclear ribonucleoprotein Sm D2.
   
 0.955
GcC1_209001
Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.
    
 0.952
GcM3_122002
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.951
GcC1_084028
Small nuclear ribonucleoprotein G.
   
  0.951
GcM3_025037
Small nuclear ribonucleoprotein-associated protein B.
    
 0.951
GcC1_216027
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.948
GcM3_067014
U5 small nuclear ribonucleoprotein 40 kDa protein.
   
 0.933
GcM3_183015
Uncharacterized protein C1A6.01c.
    
 
 0.920
Your Current Organism:
Golovinomyces cichoracearum
NCBI taxonomy Id: 62708
Other names: Erysiphe cichoracearum, G. cichoracearum
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