STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GcM3_073001Putative essential cytoplasmic protein. (984 aa)    
Predicted Functional Partners:
GcM3_012025
Putative trna splicing endonuclease subunit.
  
 
   0.508
GcM3_042025
Uncharacterized protein.
  
     0.506
GcM3_125009
Uncharacterized protein.
  
     0.485
GcM3_051001
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
  
 
   0.462
GcM3_224016
Putative tpa inducible protein.
  
     0.458
GcM3_205022
Putative ell-associated factor protein.
  
     0.447
GcM3_027003
SRR1 domain-containing protein.
  
 
   0.431
GcM3_028045
Putative hmg-i hmg-dna-binding protein.
  
     0.420
GcM3_009022
Importin subunit beta-2.
   
  
 0.415
GcM3_176014
Uncharacterized protein.
  
 
   0.410
Your Current Organism:
Golovinomyces cichoracearum
NCBI taxonomy Id: 62708
Other names: Erysiphe cichoracearum, G. cichoracearum
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