STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_01110Putative permease. (364 aa)    
Predicted Functional Partners:
SLG_01100
Putative permease.
 
 0.999
SLG_37950
Putative ABC transporter ATP-binding protein.
 
 
 0.995
SLG_01070
Acyl carrier protein.
 
     0.655
lptD
Putative organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
  
 0.652
SLG_38910
ABC transporter permease protein.
 
  
 0.641
SLG_38940
ABC transporter auxiliary protein.
  
     0.623
SLG_04960
Efflux pump periplasmic linker protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.618
SLG_02500
Biopolymer transport protein TolQ.
  
     0.587
SLG_31490
TolC-like protein.
  
     0.543
secD
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
     0.522
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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