STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_01540Putative hydrolase. (251 aa)    
Predicted Functional Partners:
SLG_01550
Hypothetical protein.
 
     0.881
SLG_16840
Conserved hypothetical protein.
  
     0.655
SLG_34440
ATP synthase mitochondrial F1 complex assembly factor 2.
  
     0.579
SLG_00410
Hypothetical protein.
  
     0.567
SLG_36860
Putative ubiquinone biosynthesis protein.
  
 
   0.495
SLG_15000
Putative oxidoreductase.
  
     0.479
SLG_38820
3-mercaptopyruvate sulfurtransferase.
  
 
   0.448
ligC
4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase; Involved in the degradation of protocatechuate (PCA) via the PCA 4,5-cleavage pathway. Catalyzes the oxidation of the hemiacetal form of 4-carboxy-2-hydroxymuconate-6-semialdehyde (CHMS) to produce 2- pyrone-4,6-dicarboxylate (PDC). LigC has 10-times-higher affinity to NADP than to NAD.
   
  
 0.446
pobA
P-hydroxybenzoate 3-monooxygenase.
   
  
 0.446
SLG_28630
Glyoxalase-family protein.
  
  
 0.433
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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