Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLG_01550Hypothetical protein. (305 aa)    
Predicted Functional Partners:
SLG_01540
Putative hydrolase.
 
     0.875
SLG_37930
Hypothetical protein.
  
     0.722
SLG_12990
Conserved hypothetical protein.
  
     0.720
SLG_15030
Hypothetical protein.
  
     0.702
SLG_01070
Acyl carrier protein.
  
    0.700
SLG_35110
Hypothetical protein.
 
     0.695
SLG_33880
Hypothetical membrane protein.
  
     0.676
SLG_05510
Hypothetical protein.
  
     0.647
SLG_29620
Hypothetical protein.
  
     0.631
SLG_22520
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
  
    0.629
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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