Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLG_01650Hypothetical protein. (248 aa)    
Predicted Functional Partners:
SLG_17060
TonB-dependent receptor-like protein.
  
 
 0.681
SLG_02490
Biopolymer transport protein TolR/ExbD.
  
 
 0.600
SLG_10790
TonB-dependent receptor-like protein.
  
 
 0.584
SLG_01630
Hypothetical protein.
  
    0.578
SLG_02500
Biopolymer transport protein TolQ.
  
 
 0.573
SLG_01620
Hypothetical membrane protein.
       0.566
SLG_01640
Putative oxidase.
       0.566
SLG_10800
Conserved hypothetical membrane protein.
  
 
 0.546
exbD
Biopolymer transport protein ExbD.
  
 
 0.522
exbD-2
Biopolymer transport protein ExbD.
  
 
 0.522
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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