STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_01650Hypothetical protein. (248 aa)    
Predicted Functional Partners:
SLG_02490
Biopolymer transport protein TolR/ExbD.
  
 
 0.734
SLG_17060
TonB-dependent receptor-like protein.
  
 
 0.720
SLG_02500
Biopolymer transport protein TolQ.
  
 
 0.711
SLG_10800
Conserved hypothetical membrane protein.
  
 
 0.701
exbD
Biopolymer transport protein ExbD.
  
 
 0.663
exbD-2
Biopolymer transport protein ExbD.
  
 
 0.663
exbB
Biopolymer transport protein ExbB.
  
 
 0.634
SLG_01630
Hypothetical protein.
  
    0.592
SLG_01620
Hypothetical membrane protein.
       0.566
SLG_01640
Putative oxidase.
       0.566
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.