STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_01720L-lactate dehydrogenase (cytochrome). (387 aa)    
Predicted Functional Partners:
maeB
NADP-dependent malic enzyme.
    
 0.916
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 
 0.914
SLG_11810
Conserved hypothetical protein.
     
 0.905
SLG_15340
L-lactate dehydrogenase; Fragment.
  
  
 
0.904
SLG_06530
Conserved hypothetical protein.
     
 0.902
SLG_06540
Conserved hypothetical protein.
     
 0.902
SLG_16880
Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.
     
 0.902
ppdK
Protein synonym:pyruvate orthophosphate dikinase; Belongs to the PEP-utilizing enzyme family.
     
 0.902
pdhB
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
     
 0.902
pdhB-2
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
     
 0.902
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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