Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SLG_03040HlyD family secretion protein. (333 aa)    
Predicted Functional Partners:
SLG_03010
Putative ABC transporter permease protein.
 
  
 0.926
SLG_03020
Putative ABC transporter permease protein.
 
  
 0.921
SLG_03030
Putative ABC transporter ATP-binding protein.
 
  
 0.920
SLG_03050
TetR family transcriptional regulator.
 
  
 0.877
SLG_03000
Putative outer membrane protein.
 
 0.833
SLG_31490
TolC-like protein.
 
 0.831
SLG_25690
Putative transporter.
 
 0.827
SLG_23680
Multidrug resistance protein A.
 
  
  0.793
SLG_34660
Putative ABC transporter permease protein.
 
  
 0.662
SLG_06940
Efflux pump outer membrane protein.
 
 0.654
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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