Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLG_03310Hypothetical protein. (238 aa)    
Predicted Functional Partners:
SLG_03280
Hypothetical protein.
       0.853
SLG_03290
Conserved hypothetical protein; Belongs to the UPF0235 family.
       0.853
SLG_03320
MarC family integral membrane protein.
       0.853
folD
Methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
       0.805
SLG_25480
CelD-like protein.
  
     0.769
SLG_02440
Hypothetical protein.
  
     0.753
SLG_33340
Hypothetical membrane protein.
  
     0.749
SLG_03870
Hypothetical protein.
  
     0.746
SLG_33130
Hypothetical protein.
  
     0.723
cpaD
Flp pilus assembly protein.
  
     0.721
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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