STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_03360Putative 2'-5' RNA ligase. (192 aa)    
Predicted Functional Partners:
SLG_29140
Heavy metal efflux system protein.
  
     0.633
SLG_22010
Putative portal protein.
  
     0.631
SLG_07050
Hypothetical protein.
  
     0.615
SLG_22070
Conserved hypothetical protein.
  
     0.612
SLG_16770
LuxR family transcriptional regulator.
  
     0.602
SLG_07030
Hypothetical protein.
  
     0.601
SLG_32170
Putative glycosyltransferase.
  
     0.596
SLG_07970
Heavy metal efflux system protein.
  
     0.594
SLG_03370
Extradiol dioxygenase.
       0.578
SLG_22180
Putative phage tape measure protein.
 
    0.565
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.