Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLG_03370Extradiol dioxygenase. (267 aa)    
Predicted Functional Partners:
SLG_03380
Hypothetical protein.
       0.645
SLG_38820
3-mercaptopyruvate sulfurtransferase.
 
      0.641
SLG_12350
Pirin-related protein; Belongs to the pirin family.
 
  
 0.595
SLG_03360
Putative 2'-5' RNA ligase.
       0.578
SLG_03390
Hypothetical protein.
 
     0.505
SLG_35810
Conserved hypothetical protein; Belongs to the pirin family.
 
  
 0.494
SLG_35850
Pirin-related protein; Belongs to the pirin family.
 
  
 0.469
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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