Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLG_03490Hypothetical protein. (291 aa)    
Predicted Functional Partners:
cpaD
Flp pilus assembly protein.
 
     0.648
SLG_33340
Hypothetical membrane protein.
  
     0.632
SLG_23980
Tight adherence protein TadE.
  
     0.585
SLG_23970
Tight adherence protein TadE.
  
     0.565
SLG_01580
Hypothetical protein.
 
     0.560
SLG_34310
Conserved hypothetical membrane protein.
  
     0.463
SLG_03870
Hypothetical protein.
  
     0.445
thiC
Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.
       0.444
SLG_32280
Hypothetical protein.
  
     0.442
SLG_04460
TonB-dependent receptor-like protein.
  
     0.434
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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