STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpaBFlp pilus assembly protein. (336 aa)    
Predicted Functional Partners:
cpaE
Flp pilus assembly protein ATPase.
 
  
 0.993
cpaC
Flp pilus assembly protein; Belongs to the bacterial secretin family.
 
  
 0.992
SLG_03540
Flp pilus assembly protein TadB.
 
  
 0.990
SLG_03530
Flp pilus assembly protein TadC.
 
  
 0.985
cpaA
Flp pilus assembly protein protease.
 
  
 0.971
SLG_17830
Putative pilin Flp.
 
  
 0.949
cpaD
Flp pilus assembly protein.
 
     0.925
SLG_37430
Archaeal flagellar protein FlaI.
 
  
 0.866
SLG_23960
Flp pilus assembly protein TadG.
 
  
 0.865
SLG_23970
Tight adherence protein TadE.
 
  
 0.827
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.