Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SLG_04440RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (192 aa)    
Predicted Functional Partners:
SLG_04450
Putative anti-sigma factor.
 
 
 0.972
SLG_04460
TonB-dependent receptor-like protein.
 
    0.961
SLG_26870
Putative anti-sigma factor.
 
 
 0.837
SLG_28820
Putative anti-sigma factor.
 
 
 0.834
SLG_30040
Putative anti-sigma factor.
 
 
 0.833
SLG_25100
Conserved hypothetical membrane protein.
 
 
 0.823
SLG_19700
Putative anti-sigma factor.
 
 
 0.819
SLG_19690
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.761
SLG_26860
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.739
SLG_04430
YapH-family protein.
 
    0.682
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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