Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLG_04460TonB-dependent receptor-like protein. (820 aa)    
Predicted Functional Partners:
SLG_04450
Putative anti-sigma factor.
 
    0.964
SLG_04440
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.961
SLG_04430
YapH-family protein.
 
 
   0.896
SLG_26870
Putative anti-sigma factor.
 
  
 0.677
SLG_37710
TonB-dependent receptor-like protein.
  
     0.661
SLG_25100
Conserved hypothetical membrane protein.
 
    0.638
SLG_27360
TonB-dependent receptor-like protein.
  
     0.638
SLG_32840
Hypothetical protein.
  
    0.635
SLG_28820
Putative anti-sigma factor.
 
  
 0.629
SLG_30040
Putative anti-sigma factor.
 
  
 0.611
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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