STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLG_04500Putative glycoside hydrolase. (598 aa)    
Predicted Functional Partners:
otsA
Alpha,alpha-trehalose-phosphate synthase (UDP-forming).
 
   
 0.977
SLG_04510
HAD-superfamily hydrolase subfamily IIB (Family); Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
 
   
 0.973
SLG_04480
Hypothetical protein.
       0.572
SLG_21400
Putative MscS family transporter.
 
    0.552
ptpA
Low molecular weight protein-tyrosine-phosphatase.
       0.549
SLG_07190
Alpha-glucosidase.
     
 0.471
SLG_04530
Hypothetical protein.
       0.415
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.