STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptpALow molecular weight protein-tyrosine-phosphatase. (157 aa)    
Predicted Functional Partners:
arsB
Arsenite export protein.
  
  
 0.726
SLG_34100
Putative glucosyltransferase.
  
  
 0.656
SLG_34080
Hypothetical protein.
    
 
 0.642
SLG_08170
Glycoside hydrolase 68 family protein; Belongs to the glycosyl hydrolase 68 family.
  
 
 0.631
SLG_21470
Putative exopolysaccharide biosynthesis protein.
  
 
 0.607
SLG_04530
Hypothetical protein.
       0.566
otsA
Alpha,alpha-trehalose-phosphate synthase (UDP-forming).
     
 0.565
SLG_04510
HAD-superfamily hydrolase subfamily IIB (Family); Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
     
 0.565
SLG_04500
Putative glycoside hydrolase.
       0.549
trxC
Thioredoxin.
  
 
 0.544
Your Current Organism:
Sphingobium sp. SYK6
NCBI taxonomy Id: 627192
Other names: S. sp. SYK-6, Sphingobium sp. SYK-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.